Decision making of industrial technology innovation alliance partner selection is studied in this paper. Firstly, based on the “3C” principle of partner selection, the index system of partner selection of industrial technology innovation alliance is established from the following three dimensions: compatibility, resource and capability, commitment. Secondly, a decision model that integrates fuzzy logic, analytic network process and VIKOR is proposed in order to solve the decision problem with the characteristics of correlation between index and qualitative index value. The main idea of the method is to use fuzzy analytic network process (FANP) to assign the weights of the correlated index, and use the fuzzy VIKOR (FVIKOR) to evaluate and rank the candidate partners. Thirdly, an example is analyzed to illustrate the feasibility and effectiveness of the suggested method. The research shows that this method can effectively take into account the correlation between the evaluation indexes of the industrial technology innovation alliance partners, and scientifically deal with the uncertainty of the index information and the fuzzy nature of the experts. Therefore, this method is of positive significance for improving the effectiveness selection of industrial technology innovation alliance partners.