Based on the field survey data of innovation and entrepreneurship education in several local universities in Jiangxi Province, we use the ordered Probit model to interpret the index factors that may affect the service function of science and technology innovation in Local Universities under the background of innovation and entrepreneurship education. The position and function of local colleges and universities of Jiangxi province innovation in the regional innovation system is analyzed, it is pointed out that the establishment of good restraint and incentive mechanism to guide the local colleges and universities can consciously implement innovation education, give full play to science and technology innovation service function of local colleges and universities. The research shows that the implementation of innovation and entrepreneurship education in local universities can not only improve the technological innovation ability and comprehensive strength of local universities, but also effectively promote the harmonious development of universities in the region.